STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
JG29_14760Amino acid ABC transporter membrane protein 1, PAAT family. (212 aa)    
Predicted Functional Partners:
JG29_14770
Uncharacterized protein.
 0.999
JG29_14780
Phosphonate-transporting ATPase.
 0.998
JG29_14800
Uncharacterized protein.
 0.998
JG29_13400
ABC-type polar amino acid transport system, ATPase component.
 0.994
glnq1
Polar amino acid transport system ATP-binding protein.
 0.993
JG29_14750
Amino acid ABC superfamily ATP binding cassette transporter, membrane protein.
 
  
 
0.989
JG29_10390
Amino acid ABC transporter, ATP-binding protein.
 0.966
JG29_10380
Extracellular solute-binding protein.
 
 0.850
JG29_00260
Glutamine ABC transporter, substrate-binding protein.
 
0.685
JG29_00270
ABC transporter, permease protein.
 
0.685
Your Current Organism:
Lactobacillus mellis
NCBI taxonomy Id: 1218508
Other names: CCUG 63289, DSM 26255, L. mellis, Lactobacillus mellis Olofsson et al. 2014, Lactobacillus sp. H1HS38N, Lactobacillus sp. Hon2, Lactobacillus sp. Hon2N, strain Hon2N
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