STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
JG29_15240DNA-binding response regulator. (227 aa)    
Predicted Functional Partners:
JG29_15230
Two-component system, sensor histidine kinase.
 0.987
JG29_05950
Sensor histidine kinase.
 0.986
JG29_04220
ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein.
 0.933
JG29_00440
Two-component system, sensor histidine kinase.
 0.932
JG29_11790
Hypothetical protein.
 
 0.930
JG29_11070
Two-component system, sensor histidine kinase.
 0.916
murE
UDP-N-acetylmuramyl-tripeptide synthetase; Catalyzes the addition of an amino acid to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanyl-D-glutamate (UMAG) in the biosynthesis of bacterial cell-wall peptidoglycan.
     
 0.808
JG29_15210
Aspartate racemase; Belongs to the aspartate/glutamate racemases family.
       0.798
cobA
Uroporphyrinogen-III C-methyltransferase.
     
 0.793
pyk
Pyruvate kinase; Belongs to the pyruvate kinase family.
     
 0.784
Your Current Organism:
Lactobacillus mellis
NCBI taxonomy Id: 1218508
Other names: CCUG 63289, DSM 26255, L. mellis, Lactobacillus mellis Olofsson et al. 2014, Lactobacillus sp. H1HS38N, Lactobacillus sp. Hon2, Lactobacillus sp. Hon2N, strain Hon2N
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.