STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GCA_001895045_00111Unannotated protein. (375 aa)    
Predicted Functional Partners:
GCA_001895045_00109
Unannotated protein.
 
  
 0.944
xlnD_2
Unannotated protein.
  
  
 
0.927
cocE_1
Unannotated protein.
 
     0.907
opd_1
Unannotated protein.
 
     0.849
lip2_1
Unannotated protein.
 
  
 0.847
opd_2
Unannotated protein; Belongs to the metallo-dependent hydrolases superfamily. Phosphotriesterase family.
 
     0.797
ppsB
Unannotated protein.
 
 
 0.742
eryF
Unannotated protein; Belongs to the cytochrome P450 family.
 
 
 0.717
ophA1_2
Unannotated protein.
 
 
 0.648
GCA_001895045_00114
Unannotated protein.
 
   
 0.614
Your Current Organism:
Rhodococcus coprophilus
NCBI taxonomy Id: 1219011
Other names: R. coprophilus NBRC 100603, Rhodococcus coprophilus NBRC 100603
Server load: low (30%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.