STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GCA_001895045_03583Unannotated protein. (581 aa)    
Predicted Functional Partners:
GCA_001895045_03579
Unannotated protein.
 
   
 0.944
GCA_001895045_03581
Unannotated protein.
 
   
 0.908
GCA_001895045_03585
Unannotated protein.
 
   
 0.848
GCA_001895045_03582
Unannotated protein.
 
     0.833
pimB_2
Unannotated protein.
  
   
 0.748
GCA_001895045_03580
Unannotated protein.
 
   
 0.726
aftC
Unannotated protein.
  
     0.707
GCA_001895045_02255
Unannotated protein.
 
     0.699
GCA_001895045_02748
Unannotated protein.
  
   
 0.694
GCA_001895045_01968
Unannotated protein.
 
     0.689
Your Current Organism:
Rhodococcus coprophilus
NCBI taxonomy Id: 1219011
Other names: R. coprophilus NBRC 100603, Rhodococcus coprophilus NBRC 100603
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.