STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GCA_001590965_03186Unannotated protein. (385 aa)    
Predicted Functional Partners:
GCA_001590965_03185
Unannotated protein.
       0.773
GCA_001590965_03187
Unannotated protein.
       0.752
GCA_001590965_01470
Unannotated protein.
  
     0.749
GCA_001590965_03180
Unannotated protein.
  
  0.709
GCA_001590965_02522
Unannotated protein.
  
  0.701
GCA_001590965_00941
Unannotated protein.
  
  0.687
GCA_001590965_00037
Unannotated protein.
  
  0.685
GCA_001590965_00096
Unannotated protein.
  
  0.677
GCA_001590965_00977
Unannotated protein.
 
    0.668
GCA_001590965_01125
Unannotated protein.
  
  0.652
Your Current Organism:
Novosphingobium lentum
NCBI taxonomy Id: 1219033
Other names: N. lentum NBRC 107847, Novosphingobium lentum NBRC 107847
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.