STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GAO39052.1Hypothetical protein. (407 aa)    
Predicted Functional Partners:
GAO39053.1
Putative exopolysaccharide biosynthesis protein.
 
     0.920
GAO39039.1
O-antigen polymerase family protein.
 
  
  0.816
GAO39054.1
Putative polysaccharide export protein.
 
    0.810
GAO38587.1
Hypothetical protein.
  
     0.561
polA
DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family.
  
    0.542
ribB
3,4-dihydroxy-2-butanone-4-phosphate synthase; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; Belongs to the DHBP synthase family.
    
  0.529
GAO40289.1
Hypothetical protein.
  
     0.483
GAO38588.1
Hypothetical protein.
  
     0.481
GAO38585.1
Putative DNA methyltransferase.
  
     0.470
GAO39055.1
Hypothetical protein.
       0.440
Your Current Organism:
Sphingomonas changbaiensis
NCBI taxonomy Id: 1219043
Other names: S. changbaiensis NBRC 104936, Sphingomonas changbaiensis NBRC 104936, Sphingomonas changbaiensis V2M44, Sphingomonas sp. V2M44
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.