STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GCA_001598555_00020Unannotated protein. (454 aa)    
Predicted Functional Partners:
GCA_001598555_04997
Unannotated protein.
 
 0.989
GCA_001598555_00022
Unannotated protein.
 
 
 0.986
GCA_001598555_00021
Unannotated protein.
 
  
 0.979
GCA_001598555_03606
Unannotated protein.
 
 0.926
GCA_001598555_04995
Unannotated protein.
 
  
 0.914
GCA_001598555_02650
Unannotated protein.
 
 
 0.899
GCA_001598555_00024
Unannotated protein.
 
  
 0.823
GCA_001598555_04998
Unannotated protein.
 
  
 0.816
GCA_001598555_00025
Unannotated protein.
 
     0.806
GCA_001598555_00023
Unannotated protein.
 
     0.772
Your Current Organism:
Novosphingobium rosa
NCBI taxonomy Id: 1219053
Other names: N. rosa NBRC 15208, Novosphingobium rosa NBRC 15208, Sphingomonas rosa NBRC 15208
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.