STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GCA_000454545_04102Unannotated protein. (145 aa)    
Predicted Functional Partners:
GCA_000454545_02424
Unannotated protein.
  
 0.968
GCA_000454545_02361
Unannotated protein.
  
 0.927
GCA_000454545_02362
Unannotated protein.
  
 0.927
GCA_000454545_02642
Unannotated protein.
  
 0.927
GCA_000454545_03279
Unannotated protein.
  
 0.927
GCA_000454545_04095
Unannotated protein.
  
 0.927
GCA_000454545_04096
Unannotated protein.
  
 0.927
GCA_000454545_00045
Unannotated protein.
  
 0.919
GCA_000454545_00104
Unannotated protein.
  
 0.919
GCA_000454545_00775
Unannotated protein.
  
 0.919
Your Current Organism:
Xanthomonas cassavae
NCBI taxonomy Id: 1219375
Other names: X. cassavae CFBP 4642, Xanthomonas cassavae CFBP 4642, Xanthomonas cassavae ICMP 204, Xanthomonas cassavae LMG 673, Xanthomonas cassavae NCPPB 101
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.