Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SHM98766.1 | SHM98789.1 | SAMN05216288_0183 | SAMN05216288_0184 | Hypothetical protein. | Cytochrome c-type biogenesis protein CcmH. | 0.806 |
SHM98766.1 | SHM98820.1 | SAMN05216288_0183 | SAMN05216288_0185 | Hypothetical protein. | Cytochrome c-type biogenesis protein CcmH; Possible subunit of a heme lyase. | 0.806 |
SHM98766.1 | SHM98845.1 | SAMN05216288_0183 | SAMN05216288_0186 | Hypothetical protein. | Cytochrome c biogenesis protein CcmG, thiol:disulfide interchange protein DsbE. | 0.806 |
SHM98766.1 | SHM98873.1 | SAMN05216288_0183 | SAMN05216288_0187 | Hypothetical protein. | Cytochrome c-type biogenesis protein CcmF. | 0.806 |
SHM98766.1 | SHM98927.1 | SAMN05216288_0183 | SAMN05216288_0189 | Hypothetical protein. | Heme exporter protein D; Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes; Belongs to the CcmD/CycX/HelD family. | 0.806 |
SHM98766.1 | SHM98983.1 | SAMN05216288_0183 | SAMN05216288_0191 | Hypothetical protein. | Heme exporter protein B; Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes; Belongs to the CcmB/CycW/HelB family. | 0.680 |
SHM98766.1 | SHM99035.1 | SAMN05216288_0183 | SAMN05216288_0193 | Hypothetical protein. | Hook-length control protein FliK. | 0.503 |
SHM98766.1 | ccmA | SAMN05216288_0183 | SAMN05216288_0192 | Hypothetical protein. | Heme exporter protein A; Part of the ABC transporter complex CcmAB involved in the biogenesis of c-type cytochromes; once thought to export heme, this seems not to be the case, but its exact role is uncertain. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. CcmA exporter (TC 3.A.1.107) family. | 0.680 |
SHM98766.1 | ccmC | SAMN05216288_0183 | SAMN05216288_0190 | Hypothetical protein. | Heme exporter protein C; Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes; Belongs to the CcmC/CycZ/HelC family. | 0.806 |
SHM98766.1 | ccmE | SAMN05216288_0183 | SAMN05216288_0188 | Hypothetical protein. | Cytochrome c-type biogenesis protein CcmE; Heme chaperone required for the biogenesis of c-type cytochromes. Transiently binds heme delivered by CcmC and transfers the heme to apo-cytochromes in a process facilitated by CcmF and CcmH. Belongs to the CcmE/CycJ family. | 0.806 |
SHM98789.1 | SHM98766.1 | SAMN05216288_0184 | SAMN05216288_0183 | Cytochrome c-type biogenesis protein CcmH. | Hypothetical protein. | 0.806 |
SHM98789.1 | SHM98820.1 | SAMN05216288_0184 | SAMN05216288_0185 | Cytochrome c-type biogenesis protein CcmH. | Cytochrome c-type biogenesis protein CcmH; Possible subunit of a heme lyase. | 0.982 |
SHM98789.1 | SHM98845.1 | SAMN05216288_0184 | SAMN05216288_0186 | Cytochrome c-type biogenesis protein CcmH. | Cytochrome c biogenesis protein CcmG, thiol:disulfide interchange protein DsbE. | 0.985 |
SHM98789.1 | SHM98873.1 | SAMN05216288_0184 | SAMN05216288_0187 | Cytochrome c-type biogenesis protein CcmH. | Cytochrome c-type biogenesis protein CcmF. | 0.996 |
SHM98789.1 | SHM98927.1 | SAMN05216288_0184 | SAMN05216288_0189 | Cytochrome c-type biogenesis protein CcmH. | Heme exporter protein D; Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes; Belongs to the CcmD/CycX/HelD family. | 0.912 |
SHM98789.1 | SHM98983.1 | SAMN05216288_0184 | SAMN05216288_0191 | Cytochrome c-type biogenesis protein CcmH. | Heme exporter protein B; Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes; Belongs to the CcmB/CycW/HelB family. | 0.930 |
SHM98789.1 | SHM99035.1 | SAMN05216288_0184 | SAMN05216288_0193 | Cytochrome c-type biogenesis protein CcmH. | Hook-length control protein FliK. | 0.522 |
SHM98789.1 | ccmA | SAMN05216288_0184 | SAMN05216288_0192 | Cytochrome c-type biogenesis protein CcmH. | Heme exporter protein A; Part of the ABC transporter complex CcmAB involved in the biogenesis of c-type cytochromes; once thought to export heme, this seems not to be the case, but its exact role is uncertain. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. CcmA exporter (TC 3.A.1.107) family. | 0.929 |
SHM98789.1 | ccmC | SAMN05216288_0184 | SAMN05216288_0190 | Cytochrome c-type biogenesis protein CcmH. | Heme exporter protein C; Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes; Belongs to the CcmC/CycZ/HelC family. | 0.961 |
SHM98789.1 | ccmE | SAMN05216288_0184 | SAMN05216288_0188 | Cytochrome c-type biogenesis protein CcmH. | Cytochrome c-type biogenesis protein CcmE; Heme chaperone required for the biogenesis of c-type cytochromes. Transiently binds heme delivered by CcmC and transfers the heme to apo-cytochromes in a process facilitated by CcmF and CcmH. Belongs to the CcmE/CycJ family. | 0.966 |
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