STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHL75824.1Hypothetical protein. (380 aa)    
Predicted Functional Partners:
SHM56837.1
Uncharacterized conserved protein, circularly permuted ATPgrasp superfamily.
 
     0.706
SHL75781.1
Uncharacterized conserved protein.
       0.677
SHM56887.1
Transglutaminase-like enzyme, putative cysteine protease.
 
     0.584
SHM89011.1
Uncharacterized conserved protein, circularly permuted ATPgrasp superfamily.
 
     0.580
SHM89040.1
Uncharacterized conserved protein, Alpha-E superfamily.
 
     0.488
SHL75864.1
Peptidyl-prolyl cis-trans isomerase C.
       0.484
Your Current Organism:
Pseudomonas punonensis
NCBI taxonomy Id: 1220495
Other names: CECT 8089, LMG 26839, LMG:26839, P. punonensis, Pseudomonas punonensis Ramos et al. 2013, Pseudomonas sp. LMT03, strain LMT03
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.