STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHL82445.1Hypothetical protein. (408 aa)    
Predicted Functional Partners:
SHM81071.1
2-methylcitrate dehydratase (trans-methylaconitate-forming).
 
 
 0.787
SHM62366.1
Predicted metal-dependent hydrolase, TIM-barrel fold.
 
  
 0.761
SHL80851.1
Aconitase; Catalyzes the isomerization of citrate to isocitrate via cis- aconitate.
  
 
 0.740
SHM13874.1
Restriction system protein.
   
  
 0.631
SHM55398.1
Adenylyltransferase and sulfurtransferase.
     
 0.624
SHL87867.1
2-methylcitrate dehydratase PrpD.
 
 
  0.589
SHM46637.1
2-methylcitrate dehydratase PrpD.
 
 
  0.589
SHM46698.1
Regulator of RNase E activity RraA.
 
   
 0.584
SHL06145.1
Regulator of RNase E activity RraA.
 
   
 0.556
SHM82562.1
Amidohydrolase.
    
 0.545
Your Current Organism:
Pseudomonas punonensis
NCBI taxonomy Id: 1220495
Other names: CECT 8089, LMG 26839, LMG:26839, P. punonensis, Pseudomonas punonensis Ramos et al. 2013, Pseudomonas sp. LMT03, strain LMT03
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.