STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHM09757.1Branched chain amino acid aminotransferase apoenzyme. (339 aa)    
Predicted Functional Partners:
SHM60128.1
Homoserine dehydrogenase.
  
 0.971
leuA
2-isopropylmalate synthase; Catalyzes the condensation of the acetyl group of acetyl-CoA with 3-methyl-2-oxobutanoate (2-oxoisovalerate) to form 3-carboxy-3- hydroxy-4-methylpentanoate (2-isopropylmalate); Belongs to the alpha-IPM synthase/homocitrate synthase family. LeuA type 2 subfamily.
  
 0.970
ilvD
Dihydroxyacid dehydratase; Belongs to the IlvD/Edd family.
  
 0.900
SHM80104.1
Dihydroxy-acid dehydratase; Belongs to the IlvD/Edd family.
  
 0.890
SHM87066.1
Chorismate mutase.
    
 0.885
SHM43620.1
Methionine synthase (B12-dependent); Catalyzes the transfer of a methyl group from methyl- cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Subsequently, remethylates the cofactor using methyltetrahydrofolate.
    
 0.873
edd
6-phosphogluconate dehydratase; Catalyzes the dehydration of 6-phospho-D-gluconate to 2- dehydro-3-deoxy-6-phospho-D-gluconate; Belongs to the IlvD/Edd family.
  
 0.873
SHL16239.1
Dihydroxy-acid dehydratase; Belongs to the IlvD/Edd family.
  
 0.866
SHM10323.1
L-proline dehydrogenase; Oxidizes proline to glutamate for use as a carbon and nitrogen source; In the C-terminal section; belongs to the aldehyde dehydrogenase family.
   
 0.829
SHN07669.1
Acetolactate synthase, large subunit.
  
 0.828
Your Current Organism:
Pseudomonas punonensis
NCBI taxonomy Id: 1220495
Other names: CECT 8089, LMG 26839, LMG:26839, P. punonensis, Pseudomonas punonensis Ramos et al. 2013, Pseudomonas sp. LMT03, strain LMT03
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