STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
B655_0541Trehalose-6-phosphate synthase; PFAM: Glycosyltransferase family 20. (508 aa)    
Predicted Functional Partners:
B655_0095
PFAM: Nucleotidyl transferase; TIGRFAM: UTP-glucose-1-phosphate uridylyltransferase.
    
 0.867
B655_0755
UDP-glucose pyrophosphorylase; PFAM: Nucleotidyl transferase.
    
 0.867
B655_0233
Sucrose-phosphate phosphatase-like hydrolase, Archaeal; Catalyzes the dephosphorylation of 2-phosphoglycolate.
 
  
 0.799
B655_1436
PFAM: Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain; Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain; TIGRFAM: ornithine carbamoyltransferase; Belongs to the aspartate/ornithine carbamoyltransferase superfamily. OTCase family.
    
 0.799
B655_2033
PFAM: Methionine biosynthesis protein MetW.
 
  
 0.778
B655_1978
NhaP-type Na+(K+)/H+ antiporter; PFAM: Sodium/hydrogen exchanger family.
 
   
 0.668
B655_1018
Glycosyl transferase; PFAM: Response regulator receiver domain; Glycosyl transferase family 2.
  
 
 0.593
B655_1767
Hypothetical protein; PFAM: Polysaccharide pyruvyl transferase.
  
  
  0.557
B655_0540
Hypothetical protein.
       0.523
B655_1604
PFAM: Glycosyl transferase family 2.
 
  
 0.489
Your Current Organism:
Methanobacterium sp. Maddingley
NCBI taxonomy Id: 1220534
Other names: M. sp. Maddingley MBC34, Methanobacterium sp. Maddingley MBC34
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.