STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GCA_001552195_06274Unannotated protein. (477 aa)    
Predicted Functional Partners:
GCA_001552195_03910
Unannotated protein.
   
 
  0.774
GCA_001552195_00579
Unannotated protein.
  
     0.725
GCA_001552195_00580
Unannotated protein.
  
     0.723
GCA_001552195_00171
Unannotated protein.
  
     0.690
GCA_001552195_05648
Unannotated protein.
  
     0.661
GCA_001552195_06275
Unannotated protein.
 
     0.654
GCA_001552195_04811
Unannotated protein.
  
  
  0.627
GCA_001552195_00152
Unannotated protein.
 
  
  0.624
GCA_001552195_06690
Unannotated protein.
  
     0.604
GCA_001552195_06126
Unannotated protein.
 
  
  0.602
Your Current Organism:
Actinomadura latina
NCBI taxonomy Id: 1220563
Other names: A. latina NBRC 106108, Actinomadura latina NBRC 106108
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.