STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GCA_001552235_03848Unannotated protein. (120 aa)    
Predicted Functional Partners:
GCA_001552235_03846
Unannotated protein.
 0.999
GCA_001552235_03847
Unannotated protein.
 0.999
GCA_001552235_05898
Unannotated protein.
 
 
 0.989
GCA_001552235_05899
Unannotated protein.
  
 0.973
GCA_001552235_05223
Unannotated protein.
 
 0.970
GCA_001552235_00224
Unannotated protein.
 
  
  0.850
GCA_001552235_04057
Unannotated protein.
   
 
  0.767
GCA_001552235_00671
Unannotated protein.
     
 0.723
GCA_001552235_00231
Unannotated protein.
    
  0.605
GCA_001552235_05258
Unannotated protein.
  
    0.582
Your Current Organism:
Actinomadura rubrobrunea
NCBI taxonomy Id: 1220567
Other names: A. rubrobrunea NBRC 15275, Actinomadura rubrobrunea NBRC 15275
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.