STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GCA_001552235_04364Unannotated protein. (426 aa)    
Predicted Functional Partners:
GCA_001552235_05291
Unannotated protein.
 
 0.999
GCA_001552235_05289
Unannotated protein.
 
 0.996
GCA_001552235_01694
Unannotated protein.
 
 0.972
GCA_001552235_00671
Unannotated protein.
   
 0.957
GCA_001552235_01658
Unannotated protein.
    
 0.917
GCA_001552235_03617
Unannotated protein.
  
 0.871
GCA_001552235_00505
Unannotated protein.
  
 
 0.843
GCA_001552235_04639
Unannotated protein.
   
 
  0.829
GCA_001552235_05290
Unannotated protein.
  
  
 
0.812
GCA_001552235_04457
Unannotated protein.
  
 
  0.762
Your Current Organism:
Actinomadura rubrobrunea
NCBI taxonomy Id: 1220567
Other names: A. rubrobrunea NBRC 15275, Actinomadura rubrobrunea NBRC 15275
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.