STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GCA_001552235_05423Unannotated protein. (301 aa)    
Predicted Functional Partners:
GCA_001552235_00065
Unannotated protein.
  
   
 0.822
GCA_001552235_04609
Unannotated protein.
  
  
  0.752
GCA_001552235_01356
Unannotated protein.
  
    0.744
GCA_001552235_04879
Unannotated protein.
  
     0.730
GCA_001552235_01475
Unannotated protein.
 
 
 0.721
GCA_001552235_04481
Unannotated protein.
  
 
 0.714
GCA_001552235_04880
Unannotated protein.
  
     0.636
GCA_001552235_00370
Unannotated protein.
  
     0.612
GCA_001552235_03197
Unannotated protein.
  
   
 0.575
GCA_001552235_04039
Unannotated protein.
    
 0.557
Your Current Organism:
Actinomadura rubrobrunea
NCBI taxonomy Id: 1220567
Other names: A. rubrobrunea NBRC 15275, Actinomadura rubrobrunea NBRC 15275
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.