W2RMC4_9EURO protein (Cyphellophora europaea)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

W2RMC4_9EURO

HECT domain-containing protein. (1225 aa)

Predicted Functional Partners:

W2RU36_9EURO

0.831

W2S6V5_9EURO

0.822

W2S011_9EURO

0.754

W2S6F0_9EURO

0.727

W2S4U2_9EURO

0.665

W2S9M0_9EURO

0.665

W2S0J3_9EURO

0.647

W2RKI8_9EURO

0.628

W2SER0_9EURO

0.626

W2RZD4_9EURO

0.609

Your Current Organism:

Cyphellophora europaea

NCBI taxonomy Id: 1220924
Other names: C. europaea CBS 101466, Cyphellophora europaea CBS 101466, Phialophora europaea CBS 101466

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
W2RKI8_9EURO	W2RMC4_9EURO	W2RKI8	W2RMC4	E2_bind domain-containing protein.	HECT domain-containing protein.	0.628
W2RKI8_9EURO	W2RU36_9EURO	W2RKI8	W2RU36	E2_bind domain-containing protein.	HECT domain-containing protein.	0.991
W2RKI8_9EURO	W2RZD4_9EURO	W2RKI8	W2RZD4	E2_bind domain-containing protein.	RING-type domain-containing protein.	0.610
W2RKI8_9EURO	W2S011_9EURO	W2RKI8	W2S011	E2_bind domain-containing protein.	26S proteasome regulatory subunit rpn11.	0.710
W2RKI8_9EURO	W2S4U2_9EURO	W2RKI8	W2S4U2	E2_bind domain-containing protein.	AN1-type domain-containing protein.	0.796
W2RKI8_9EURO	W2S6F0_9EURO	W2RKI8	W2S6F0	E2_bind domain-containing protein.	UBIQUITIN_CONJUGAT_2 domain-containing protein.	0.754
W2RKI8_9EURO	W2S6V5_9EURO	W2RKI8	W2S6V5	E2_bind domain-containing protein.	Polyubiquitin.	0.813
W2RKI8_9EURO	W2S9M0_9EURO	W2RKI8	W2S9M0	E2_bind domain-containing protein.	Ubiquitin-like domain-containing protein.	0.796
W2RKI8_9EURO	W2SER0_9EURO	W2RKI8	W2SER0	E2_bind domain-containing protein.	U-box domain-containing protein.	0.707
W2RMC4_9EURO	W2RKI8_9EURO	W2RMC4	W2RKI8	HECT domain-containing protein.	E2_bind domain-containing protein.	0.628
W2RMC4_9EURO	W2RU36_9EURO	W2RMC4	W2RU36	HECT domain-containing protein.	HECT domain-containing protein.	0.831
W2RMC4_9EURO	W2RZD4_9EURO	W2RMC4	W2RZD4	HECT domain-containing protein.	RING-type domain-containing protein.	0.609
W2RMC4_9EURO	W2S011_9EURO	W2RMC4	W2S011	HECT domain-containing protein.	26S proteasome regulatory subunit rpn11.	0.754
W2RMC4_9EURO	W2S0J3_9EURO	W2RMC4	W2S0J3	HECT domain-containing protein.	26S proteasome regulatory subunit RPN1; Acts as a regulatory subunit of the 26 proteasome which is involved in the ATP-dependent degradation of ubiquitinated proteins.	0.647
W2RMC4_9EURO	W2S4U2_9EURO	W2RMC4	W2S4U2	HECT domain-containing protein.	AN1-type domain-containing protein.	0.665
W2RMC4_9EURO	W2S6F0_9EURO	W2RMC4	W2S6F0	HECT domain-containing protein.	UBIQUITIN_CONJUGAT_2 domain-containing protein.	0.727
W2RMC4_9EURO	W2S6V5_9EURO	W2RMC4	W2S6V5	HECT domain-containing protein.	Polyubiquitin.	0.822
W2RMC4_9EURO	W2S9M0_9EURO	W2RMC4	W2S9M0	HECT domain-containing protein.	Ubiquitin-like domain-containing protein.	0.665
W2RMC4_9EURO	W2SER0_9EURO	W2RMC4	W2SER0	HECT domain-containing protein.	U-box domain-containing protein.	0.626
W2RU36_9EURO	W2RKI8_9EURO	W2RU36	W2RKI8	HECT domain-containing protein.	E2_bind domain-containing protein.	0.991