W2RRA0_9EURO protein (Cyphellophora europaea)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

W2RRA0_9EURO

Uncharacterized protein. (664 aa)

Predicted Functional Partners:

W2S9E0_9EURO

0.920

W2S1Z0_9EURO

0.893

W2SA81_9EURO

0.893

W2RPQ8_9EURO

0.876

W2S7Q2_9EURO

0.872

W2SB20_9EURO

0.868

W2RPX1_9EURO

0.797

W2RR85_9EURO

0.797

W2RS04_9EURO

0.797

W2RTT4_9EURO

0.797

Your Current Organism:

Cyphellophora europaea

NCBI taxonomy Id: 1220924
Other names: C. europaea CBS 101466, Cyphellophora europaea CBS 101466, Phialophora europaea CBS 101466

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
W2RPQ8_9EURO	W2RPX1_9EURO	W2RPQ8	W2RPX1	Tryptophan synthase.	Uncharacterized protein.	0.825
W2RPQ8_9EURO	W2RR85_9EURO	W2RPQ8	W2RR85	Tryptophan synthase.	AB hydrolase-1 domain-containing protein.	0.825
W2RPQ8_9EURO	W2RRA0_9EURO	W2RPQ8	W2RRA0	Tryptophan synthase.	Uncharacterized protein.	0.876
W2RPQ8_9EURO	W2RS04_9EURO	W2RPQ8	W2RS04	Tryptophan synthase.	AB hydrolase-1 domain-containing protein.	0.825
W2RPQ8_9EURO	W2RTT4_9EURO	W2RPQ8	W2RTT4	Tryptophan synthase.	AB hydrolase-1 domain-containing protein.	0.825
W2RPQ8_9EURO	W2S7Q2_9EURO	W2RPQ8	W2S7Q2	Tryptophan synthase.	Multifunctional tryptophan biosynthesis protein; Trifunctional enzyme bearing the Gln amidotransferase (GATase) domain of anthranilate synthase, indole-glycerolphosphate synthase, and phosphoribosylanthranilate isomerase activities.	0.999
W2RPQ8_9EURO	W2S9E0_9EURO	W2RPQ8	W2S9E0	Tryptophan synthase.	Ribosomal protein S2.	0.688
W2RPQ8_9EURO	W2SB20_9EURO	W2RPQ8	W2SB20	Tryptophan synthase.	GMP synthase [glutamine-hydrolyzing].	0.625
W2RPX1_9EURO	W2RPQ8_9EURO	W2RPX1	W2RPQ8	Uncharacterized protein.	Tryptophan synthase.	0.825
W2RPX1_9EURO	W2RR85_9EURO	W2RPX1	W2RR85	Uncharacterized protein.	AB hydrolase-1 domain-containing protein.	0.723
W2RPX1_9EURO	W2RRA0_9EURO	W2RPX1	W2RRA0	Uncharacterized protein.	Uncharacterized protein.	0.797
W2RPX1_9EURO	W2RS04_9EURO	W2RPX1	W2RS04	Uncharacterized protein.	AB hydrolase-1 domain-containing protein.	0.723
W2RPX1_9EURO	W2RTT4_9EURO	W2RPX1	W2RTT4	Uncharacterized protein.	AB hydrolase-1 domain-containing protein.	0.723
W2RPX1_9EURO	W2S7Q2_9EURO	W2RPX1	W2S7Q2	Uncharacterized protein.	Multifunctional tryptophan biosynthesis protein; Trifunctional enzyme bearing the Gln amidotransferase (GATase) domain of anthranilate synthase, indole-glycerolphosphate synthase, and phosphoribosylanthranilate isomerase activities.	0.728
W2RPX1_9EURO	W2SB20_9EURO	W2RPX1	W2SB20	Uncharacterized protein.	GMP synthase [glutamine-hydrolyzing].	0.816
W2RR85_9EURO	W2RPQ8_9EURO	W2RR85	W2RPQ8	AB hydrolase-1 domain-containing protein.	Tryptophan synthase.	0.825
W2RR85_9EURO	W2RPX1_9EURO	W2RR85	W2RPX1	AB hydrolase-1 domain-containing protein.	Uncharacterized protein.	0.723
W2RR85_9EURO	W2RRA0_9EURO	W2RR85	W2RRA0	AB hydrolase-1 domain-containing protein.	Uncharacterized protein.	0.797
W2RR85_9EURO	W2RS04_9EURO	W2RR85	W2RS04	AB hydrolase-1 domain-containing protein.	AB hydrolase-1 domain-containing protein.	0.723
W2RR85_9EURO	W2RTT4_9EURO	W2RR85	W2RTT4	AB hydrolase-1 domain-containing protein.	AB hydrolase-1 domain-containing protein.	0.757