STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ANC77015.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (222 aa)    
Predicted Functional Partners:
rnhA
An endonuclease that specifically degrades the RNA strand of RNA-DNA hybrids; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.984
rnhB
Ribonuclease HII; Endonuclease that specifically degrades the RNA of RNA-DNA hybrids.
   
 
 0.727
ANC79188.1
Single-stranded DNA-binding protein; Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism.
   
 
 0.713
ANC77016.1
Phosphohydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 
 0.650
ANC77013.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.617
ANC79349.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.613
ANC76957.1
Resolvase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
 0.595
ANC77900.1
Nif3-like dinuclear metal center hexameric protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the GTP cyclohydrolase I type 2/NIF3 family.
  
  
 0.593
ANC76190.1
DNA topoisomerase III; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 
 0.565
topA
DNA topoisomerase I; Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA- (5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supe [...]
   
 
 0.565
Your Current Organism:
Fictibacillus phosphorivorans
NCBI taxonomy Id: 1221500
Other names: Bacillus sp. Ca7, CCM 8426, F. phosphorivorans, Fictibacillus phosphorivorans Glaeser et al. 2013, LMG 27063, LMG:27063, strain Ca7
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