STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
QY95_00420Arginine utilization regulatory protein RocR. (466 aa)    
Predicted Functional Partners:
QY95_00711
RNA polymerase sigma-54 factor RpoN.
 
  
 0.810
QY95_03958
Signal transduction histidine kinase.
    
 0.741
QY95_04107
Sporulation kinase B.
 
  
  0.700
QY95_00634
Sensor histidine kinase.
 
   
 0.662
QY95_04069
Chemotaxis protein CheV.
   
 
 0.621
QY95_00461
Phosphodiesterase.
    
 0.585
QY95_00462
Sensory box/GGDEF family protein.
     
 0.577
QY95_01582
Histidine kinase.
 
   
 0.577
QY95_01584
Two-component regulator.
    
 0.557
QY95_02517
Phosphodiesterase.
     
 0.556
Your Current Organism:
Quasibacillus thermotolerans
NCBI taxonomy Id: 1221996
Other names: Bacillaceae bacterium 5.5LF48TDT, Bacillaceae bacterium MTCC 8252, Bacillus sp. SgZ-8, Bacillus thermotolerans, Bacillus thermotolerans Yang et al. 2013, CCTCC AB 2012108, KACC 16706, Q. thermotolerans, strain SgZ-8
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