STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KNA92266.1Ribonuclease II; Derived by automated computational analysis using gene prediction method: Protein Homology. (477 aa)    
Predicted Functional Partners:
rph
RNase PH; tRNA nucleotidyltransferase; forms hexamers in Bacillus subtilis; phosphoroltic 3'-5' exoribonuclease; involved in maturation of tRNA precursors and removes terminal nucleotides near CCA acceptor arms of mature tRNAs; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 0.989
KNA93117.1
3'-5' exonuclease; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 0.987
KNA93041.1
Polynucleotide phosphorylase; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 
 0.865
KNA92472.1
Cold-shock protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 0.815
KNA92595.1
Cold-shock protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 0.815
KNA91994.1
Cold-shock protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 0.815
KNA89808.1
Cold-shock protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 0.815
KNA92906.1
16S rRNA methyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.804
KNA92950.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 0.789
rpsA
30S ribosomal protein S1; In Escherichia coli this protein is involved in binding to the leader sequence of mRNAs and is itself bound to the 30S subunit; autoregulates expression via a C-terminal domain; in most gram negative organisms this protein is composed of 6 repeats of the S1 domain while in gram positive there are 4 repeats; the S1 nucleic acid-binding domain is found associated with other proteins; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.789
Your Current Organism:
Gordonia jacobaea
NCBI taxonomy Id: 122202
Other names: G. jacobaea
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