STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GCA_001613465_05981Unannotated protein. (501 aa)    
Predicted Functional Partners:
GCA_001613465_01775
Unannotated protein.
  
    0.791
GCA_001613465_05204
Unannotated protein.
    0.724
GCA_001613465_00599
Unannotated protein.
    
  0.657
GCA_001613465_01010
Unannotated protein.
    
  0.556
GCA_001613465_01387
Unannotated protein.
    
  0.556
GCA_001613465_05980
Unannotated protein.
       0.532
GCA_001613465_05982
Unannotated protein.
       0.525
GCA_001613465_05203
Unannotated protein.
  
    0.517
GCA_001613465_04516
Unannotated protein.
 
  
  0.430
Your Current Organism:
Nocardia niwae
NCBI taxonomy Id: 1223489
Other names: N. niwae NBRC 108934 = DSM 45340, Nocardia niwae CCUG 57756, Nocardia niwae DSM 45340, Nocardia niwae DSM 45340 = NBRC 108934, Nocardia niwae NBRC 108934, Nocardia niwae NBRC 108934 = DSM 45340, Nocardia niwae W9241, Nocardia sp. W9241
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.