STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GAC82433.1Hypothetical protein. (400 aa)    
Predicted Functional Partners:
deaD
ATP-dependent DEAD-box RNA helicase DeaD; DEAD-box RNA helicase involved in various cellular processes at low temperature, including ribosome biogenesis, mRNA degradation and translation initiation.
   
 0.683
GAC83496.1
Putative ATP-dependent RNA helicase; Belongs to the DEAD box helicase family.
   
 0.683
GAC86246.1
Putative ATP-dependent RNA helicase.
   
 0.683
GAC82432.1
Hypothetical protein.
       0.537
GAC85569.1
Hypothetical protein.
   
    0.461
GAC86071.1
Hypothetical protein.
 
   0.401
Your Current Organism:
Gordonia paraffinivorans
NCBI taxonomy Id: 1223543
Other names: G. paraffinivorans NBRC 108238, Gordonia paraffinivorans NBRC 108238
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.