STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GAC82914.1Hypothetical protein. (124 aa)    
Predicted Functional Partners:
GAC82913.1
Hypothetical protein.
       0.801
GAC82915.1
Hypothetical protein.
       0.747
GAC82910.1
Hypothetical protein.
 
     0.745
trkA-2
Trk system potassium uptake protein TrkA.
  
     0.697
trkA
Trk system potassium uptake protein TrkA.
  
     0.660
GAC82963.1
Hypothetical protein.
  
  
 0.562
GAC82970.1
Hypothetical protein.
  
   
 0.553
htpX
Protease HtpX; Belongs to the peptidase M48B family.
   
    0.546
topA
DNA topoisomerase I; Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA- (5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supe [...]
  
  
 0.519
dnaQ
DNA polymerase III subunit epsilon.
 
   
 0.490
Your Current Organism:
Gordonia paraffinivorans
NCBI taxonomy Id: 1223543
Other names: G. paraffinivorans NBRC 108238, Gordonia paraffinivorans NBRC 108238
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.