STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GAC84801.1Putative monooxygenase. (244 aa)    
Predicted Functional Partners:
GAC84798.1
Putative phytoene dehydrogenase.
 
  
 0.968
GAC84800.1
Hypothetical protein.
 
   
 0.966
GAC84799.1
Putative glycosyltransferase.
 
   
 0.929
GAC84802.1
Putative polyprenyl synthase; Belongs to the FPP/GGPP synthase family.
 
  
 0.909
crtB
Phytoene synthase.
 
  
 0.625
GAC84803.1
Hypothetical protein.
       0.575
GAC84191.1
Hypothetical protein.
  
     0.543
GAC84804.1
Putative FMN-dependent dehydrogenase.
       0.456
GAC82315.1
Putative magnesium chelatase subunit.
  
  
 0.454
GAC84797.1
Putative phytoene dehydrogenase.
 
  
 0.453
Your Current Organism:
Gordonia paraffinivorans
NCBI taxonomy Id: 1223543
Other names: G. paraffinivorans NBRC 108238, Gordonia paraffinivorans NBRC 108238
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.