STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GAC85468.1Putative F420-dependent oxidoreductase. (345 aa)    
Predicted Functional Partners:
GAC85467.1
Hypothetical protein.
 
   
 0.825
GAC85466.1
Hypothetical protein.
 
   
 0.809
GAC85465.1
Hypothetical protein.
 
   
 0.798
GAC85460.1
Hypothetical protein.
  
  
 0.781
GAC82980.1
Hypothetical protein.
  
  
 0.774
GAC84284.1
Hypothetical protein.
  
  
 0.749
cofE
F420-0--gamma-glutamyl ligase.
 
  
 0.744
GAC84342.1
Hypothetical protein.
  
  
  0.741
GAC83706.1
Hypothetical protein.
  
     0.737
cofD
2-phospho-L-lactate transferase.
 
   
 0.736
Your Current Organism:
Gordonia paraffinivorans
NCBI taxonomy Id: 1223543
Other names: G. paraffinivorans NBRC 108238, Gordonia paraffinivorans NBRC 108238
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.