STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GCA_000720425_00863Unannotated protein. (458 aa)    
Predicted Functional Partners:
GCA_000720425_01690
Unannotated protein.
 
  
 0.848
GCA_000720425_05373
Unannotated protein.
  
  
  0.776
GCA_000720425_03752
Unannotated protein.
 
  
 0.746
GCA_000720425_01638
Unannotated protein.
  
  
 
0.662
GCA_000720425_00862
Unannotated protein.
 
     0.656
GCA_000720425_05009
Unannotated protein.
 
  
 0.567
GCA_000720425_01663
Unannotated protein.
    
  0.555
GCA_000720425_01637
Unannotated protein.
 
  
 0.547
GCA_000720425_06258
Unannotated protein.
 
  
 0.535
GCA_000720425_01661
Unannotated protein.
 
  
 0.531
Your Current Organism:
Nocardia rhamnosiphila
NCBI taxonomy Id: 1223547
Other names: N. rhamnosiphila NBRC 108938, Nocardia rhamnosiphila 202GMO, Nocardia rhamnosiphila NBRC 108938, Nocardia rhamnosiphila NRRL B-24637
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.