STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GCA_000720425_03958Unannotated protein. (259 aa)    
Predicted Functional Partners:
GCA_000720425_03959
Unannotated protein.
 
  
 0.940
GCA_000720425_06527
Unannotated protein.
  
  
 
0.910
GCA_000720425_05141
Unannotated protein.
 
  
 0.890
GCA_000720425_02863
Unannotated protein.
     
 0.816
GCA_000720425_04998
Unannotated protein.
  
 
 0.814
GCA_000720425_02715
Unannotated protein.
  
  
 0.800
GCA_000720425_02162
Unannotated protein.
  
  
 0.797
GCA_000720425_05342
Unannotated protein.
   
  
 0.719
GCA_000720425_03455
Unannotated protein.
  
   
0.646
GCA_000720425_05255
Unannotated protein.
  
  
 0.628
Your Current Organism:
Nocardia rhamnosiphila
NCBI taxonomy Id: 1223547
Other names: N. rhamnosiphila NBRC 108938, Nocardia rhamnosiphila 202GMO, Nocardia rhamnosiphila NBRC 108938, Nocardia rhamnosiphila NRRL B-24637
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.