STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GCA_000720425_05006Unannotated protein. (461 aa)    
Predicted Functional Partners:
GCA_000720425_03436
Unannotated protein.
   
 0.984
GCA_000720425_02547
Unannotated protein.
    
 0.969
GCA_000720425_02546
Unannotated protein.
    
 0.898
GCA_000720425_03632
Unannotated protein.
     
 0.892
GCA_000720425_02466
Unannotated protein.
     
 0.883
GCA_000720425_02549
Unannotated protein.
 
  
 0.621
GCA_000720425_05005
Unannotated protein.
     
 0.580
Your Current Organism:
Nocardia rhamnosiphila
NCBI taxonomy Id: 1223547
Other names: N. rhamnosiphila NBRC 108938, Nocardia rhamnosiphila 202GMO, Nocardia rhamnosiphila NBRC 108938, Nocardia rhamnosiphila NRRL B-24637
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.