STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDU06680.1precorrin-6Y C5,15-methyltransferase (decarboxylating). (470 aa)    
Predicted Functional Partners:
SDU06622.1
precorrin-8X methylmutase.
 
 
 0.999
cbiD
cobalt-precorrin-5B (C1)-methyltransferase; Catalyzes the methylation of C-1 in cobalt-precorrin-5B to form cobalt-precorrin-6A.
 
 
 0.999
SDU06725.1
precorrin-6A/cobalt-precorrin-6A reductase.
 
 
 0.999
SDU06564.1
Precorrin-3 methyltransferase.
 
 
 0.998
SDU59455.1
Precorrin-4 C11-methyltransferase.
 
 0.997
SDU06593.1
Precorrin-2 C20-methyltransferase /cobalt-factor II C20-methyltransferase; Methylates precorrin-2 at the C-20 position to produce precorrin-3A.
 
 
 0.994
SDU60583.1
Cobaltochelatase CobN subunit.
 
  
 0.978
SDU60536.1
precorrin-6A synthase (deacetylating).
 
 
 0.977
SDU59465.1
Cobalt-precorrin 5A hydrolase.
 
  
 0.966
SDU06655.1
precorrin-3B synthase.
 
  
 0.951
Your Current Organism:
Pseudomonas psychrophila
NCBI taxonomy Id: 122355
Other names: CCUG 53877, CIP 107901, DSM 17535, JCM 10889, P. psychrophila, Pseudomonas psychrophila Yumoto et al. 2002, Pseudomonas sp. CF149, Pseudomonas sp. E-3, strain E-3
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