STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDU13814.1Major Facilitator Superfamily protein. (553 aa)    
Predicted Functional Partners:
hisB
Imidazoleglycerol-phosphate dehydratase.
      0.790
hisA
1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase.
 
    0.731
SDU73927.1
Homoserine dehydrogenase.
  
  0.689
SDU59419.1
Methionine synthase (B12-dependent); Catalyzes the transfer of a methyl group from methyl- cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Subsequently, remethylates the cofactor using methyltetrahydrofolate.
   
 
  0.629
SDU13663.1
Polar amino acid transport system substrate-binding protein.
      0.619
SDU74281.1
RND family efflux transporter, MFP subunit; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
  
  0.592
SDU71914.1
Membrane fusion protein, multidrug efflux system.
  
  0.589
SDU17530.1
RND family efflux transporter, MFP subunit; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
  
  0.588
SDU15726.1
HlyD family secretion protein.
   
  0.519
SDU37509.1
Membrane fusion protein HasE.
   
  0.519
Your Current Organism:
Pseudomonas psychrophila
NCBI taxonomy Id: 122355
Other names: CCUG 53877, CIP 107901, DSM 17535, JCM 10889, P. psychrophila, Pseudomonas psychrophila Yumoto et al. 2002, Pseudomonas sp. CF149, Pseudomonas sp. E-3, strain E-3
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