STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDU38787.1Type IV pilus assembly protein PilV. (152 aa)    
Predicted Functional Partners:
SDU38831.1
Type IV pilus assembly protein PilX.
 
  
 0.994
SDU38807.1
Type IV pilus assembly protein PilW.
 
  
 0.993
SDU38847.1
Type IV pilus assembly protein PilE.
 
  
 0.917
SDU38765.1
Type IV fimbrial biogenesis protein FimT.
 
  
 0.909
SDU38873.1
Glycine oxidase.
       0.700
SDU18262.1
Phosphate transport system permease protein.
  
    0.681
SDU11459.1
Type IV pilus assembly protein PilP.
  
  
 0.608
SDU11511.1
Type IV pilus assembly protein PilN.
 
   
 0.573
SDU49011.1
Competence protein ComEC.
 
   
 0.572
SDU11484.1
Type IV pilus assembly protein PilO.
 
   
 0.571
Your Current Organism:
Pseudomonas psychrophila
NCBI taxonomy Id: 122355
Other names: CCUG 53877, CIP 107901, DSM 17535, JCM 10889, P. psychrophila, Pseudomonas psychrophila Yumoto et al. 2002, Pseudomonas sp. CF149, Pseudomonas sp. E-3, strain E-3
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.