STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDU48369.1Conjugative coupling factor TraD, TOL family. (723 aa)    
Predicted Functional Partners:
SDU48396.1
Transglycosylase SLT domain-containing protein.
 
   
 0.957
SDU48357.1
Integrating conjugative element membrane protein, PFL_4697 family.
 
     0.954
SDU48384.1
Integrating conjugative element protein, PFL_4695 family.
 
     0.953
SDU48409.1
Integrating conjugative element protein, PFL_4693 family.
 
     0.953
SDU48436.1
Type IV pili sensor histidine kinase and response regulator.
 
     0.953
SDU71059.1
HNH endonuclease.
   
 
 0.921
SDU72554.1
Hypothetical protein.
   
 
 0.921
SDU48209.1
Conjugative transfer ATPase, PFL_4706 family.
 
  
 0.863
SDU48071.1
Integrating conjugative element relaxase, PFL_4751 family.
 
   
 0.825
SDU48223.1
Conjugative transfer region lipoprotein, TIGR03751 family.
 
     0.806
Your Current Organism:
Pseudomonas psychrophila
NCBI taxonomy Id: 122355
Other names: CCUG 53877, CIP 107901, DSM 17535, JCM 10889, P. psychrophila, Pseudomonas psychrophila Yumoto et al. 2002, Pseudomonas sp. CF149, Pseudomonas sp. E-3, strain E-3
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.