STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDU64938.1Transglycosylase SLT domain-containing protein. (207 aa)    
Predicted Functional Partners:
SDU08580.1
N-acetylmuramoyl-L-alanine amidase.
  
 
 0.576
SDU64948.1
General secretion pathway protein G.
       0.571
SDU75012.1
ATP synthase in type III secretion protein N.
 
  
 0.524
SDU73854.1
Two-component system, chemotaxis family, sensor histidine kinase and response regulator WspE.
 
    0.516
SDU50436.1
Outer membrane protein OmpA.
  
     0.511
SDU64926.1
Hypothetical protein.
       0.509
SDU65544.1
Flagellar hook-associated protein 2.
  
    0.505
SDU70224.1
Flagellar hook-associated protein 2; Required for morphogenesis and for the elongation of the flagellar filament by facilitating polymerization of the flagellin monomers at the tip of growing filament. Forms a capping structure, which prevents flagellin subunits (transported through the central channel of the flagellum) from leaking out without polymerization at the distal end.
  
    0.505
SDU65597.1
Flagellum-specific ATP synthase.
 
  
 0.502
SDU65642.1
Flagellar hook-basal body complex protein FliE.
  
  
 0.493
Your Current Organism:
Pseudomonas psychrophila
NCBI taxonomy Id: 122355
Other names: CCUG 53877, CIP 107901, DSM 17535, JCM 10889, P. psychrophila, Pseudomonas psychrophila Yumoto et al. 2002, Pseudomonas sp. CF149, Pseudomonas sp. E-3, strain E-3
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.