STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDU67315.1RNA polymerase sigma-70 factor, ECF subfamily. (164 aa)    
Predicted Functional Partners:
SDU67305.1
FecR family protein.
 0.956
SDU73343.1
Anti sigma-E protein, RseA.
  
 0.893
SDU71489.1
FecR family protein.
 
 0.857
SDU72455.1
FecR family protein.
 
 0.857
SDU55902.1
Ferric-dicitrate binding protein FerR, regulates iron transport through sigma-19.
  
 0.831
SDU37409.1
FecR family protein.
 
  0.829
SDU56376.1
Ferric-dicitrate binding protein FerR, regulates iron transport through sigma-19.
  
  0.829
SDU57772.1
FecR family protein.
 
  0.829
SDU14435.1
FecR family protein.
  
  0.828
SDU32212.1
Ferric-dicitrate binding protein FerR, regulates iron transport through sigma-19.
  
  0.828
Your Current Organism:
Pseudomonas psychrophila
NCBI taxonomy Id: 122355
Other names: CCUG 53877, CIP 107901, DSM 17535, JCM 10889, P. psychrophila, Pseudomonas psychrophila Yumoto et al. 2002, Pseudomonas sp. CF149, Pseudomonas sp. E-3, strain E-3
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.