Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| SDU24597.1 | SDU37048.1 | SAMN04490201_0785 | SAMN04490201_1287 | Exodeoxyribonuclease-3. | Superfamily II DNA and RNA helicase; Belongs to the DEAD box helicase family. | 0.782 |
| SDU24597.1 | SDU71533.1 | SAMN04490201_0785 | SAMN04490201_4130 | Exodeoxyribonuclease-3. | Exodeoxyribonuclease III. | 0.736 |
| SDU24597.1 | SDU73733.1 | SAMN04490201_0785 | SAMN04490201_4560 | Exodeoxyribonuclease-3. | Cold-shock DNA-binding protein family. | 0.794 |
| SDU36880.1 | SDU37048.1 | SAMN04490201_1280 | SAMN04490201_1287 | ATP-dependent helicase HrpB. | Superfamily II DNA and RNA helicase; Belongs to the DEAD box helicase family. | 0.912 |
| SDU36880.1 | SDU73733.1 | SAMN04490201_1280 | SAMN04490201_4560 | ATP-dependent helicase HrpB. | Cold-shock DNA-binding protein family. | 0.853 |
| SDU36880.1 | pnp | SAMN04490201_1280 | SAMN04490201_4912 | ATP-dependent helicase HrpB. | Polyribonucleotide nucleotidyltransferase; Involved in mRNA degradation. Catalyzes the phosphorolysis of single-stranded polyribonucleotides processively in the 3'- to 5'- direction. | 0.800 |
| SDU36880.1 | rnd | SAMN04490201_1280 | SAMN04490201_2243 | ATP-dependent helicase HrpB. | Ribonuclease D; Exonuclease involved in the 3' processing of various precursor tRNAs. Initiates hydrolysis at the 3'-terminus of an RNA molecule and releases 5'-mononucleotides; Belongs to the RNase D family. | 0.974 |
| SDU36880.1 | rnr | SAMN04490201_1280 | SAMN04490201_0142 | ATP-dependent helicase HrpB. | RNAse R; 3'-5' exoribonuclease that releases 5'-nucleoside monophosphates and is involved in maturation of structured RNAs. | 0.446 |
| SDU36880.1 | rph | SAMN04490201_1280 | SAMN04490201_0787 | ATP-dependent helicase HrpB. | RNAse PH; Phosphorolytic 3'-5' exoribonuclease that plays an important role in tRNA 3'-end maturation. Removes nucleotide residues following the 3'-CCA terminus of tRNAs; can also add nucleotides to the ends of RNA molecules by using nucleoside diphosphates as substrates, but this may not be physiologically important. Probably plays a role in initiation of 16S rRNA degradation (leading to ribosome degradation) during starvation. | 0.841 |
| SDU36880.1 | rpsL | SAMN04490201_1280 | SAMN04490201_1153 | ATP-dependent helicase HrpB. | SSU ribosomal protein S12P; Interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone. Located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side and probably holding the rRNA structure together. The combined cluster of proteins S8, S12 and S17 appears to hold together the shoulder and platform of the 30S subunit. | 0.963 |
| SDU37048.1 | SDU24597.1 | SAMN04490201_1287 | SAMN04490201_0785 | Superfamily II DNA and RNA helicase; Belongs to the DEAD box helicase family. | Exodeoxyribonuclease-3. | 0.782 |
| SDU37048.1 | SDU36880.1 | SAMN04490201_1287 | SAMN04490201_1280 | Superfamily II DNA and RNA helicase; Belongs to the DEAD box helicase family. | ATP-dependent helicase HrpB. | 0.912 |
| SDU37048.1 | SDU70896.1 | SAMN04490201_1287 | SAMN04490201_4051 | Superfamily II DNA and RNA helicase; Belongs to the DEAD box helicase family. | ATP-dependent helicase HrpA. | 0.913 |
| SDU37048.1 | SDU71533.1 | SAMN04490201_1287 | SAMN04490201_4130 | Superfamily II DNA and RNA helicase; Belongs to the DEAD box helicase family. | Exodeoxyribonuclease III. | 0.782 |
| SDU37048.1 | SDU73733.1 | SAMN04490201_1287 | SAMN04490201_4560 | Superfamily II DNA and RNA helicase; Belongs to the DEAD box helicase family. | Cold-shock DNA-binding protein family. | 0.678 |
| SDU37048.1 | pnp | SAMN04490201_1287 | SAMN04490201_4912 | Superfamily II DNA and RNA helicase; Belongs to the DEAD box helicase family. | Polyribonucleotide nucleotidyltransferase; Involved in mRNA degradation. Catalyzes the phosphorolysis of single-stranded polyribonucleotides processively in the 3'- to 5'- direction. | 0.966 |
| SDU37048.1 | rnd | SAMN04490201_1287 | SAMN04490201_2243 | Superfamily II DNA and RNA helicase; Belongs to the DEAD box helicase family. | Ribonuclease D; Exonuclease involved in the 3' processing of various precursor tRNAs. Initiates hydrolysis at the 3'-terminus of an RNA molecule and releases 5'-mononucleotides; Belongs to the RNase D family. | 0.637 |
| SDU37048.1 | rnr | SAMN04490201_1287 | SAMN04490201_0142 | Superfamily II DNA and RNA helicase; Belongs to the DEAD box helicase family. | RNAse R; 3'-5' exoribonuclease that releases 5'-nucleoside monophosphates and is involved in maturation of structured RNAs. | 0.462 |
| SDU37048.1 | rph | SAMN04490201_1287 | SAMN04490201_0787 | Superfamily II DNA and RNA helicase; Belongs to the DEAD box helicase family. | RNAse PH; Phosphorolytic 3'-5' exoribonuclease that plays an important role in tRNA 3'-end maturation. Removes nucleotide residues following the 3'-CCA terminus of tRNAs; can also add nucleotides to the ends of RNA molecules by using nucleoside diphosphates as substrates, but this may not be physiologically important. Probably plays a role in initiation of 16S rRNA degradation (leading to ribosome degradation) during starvation. | 0.497 |
| SDU37048.1 | rpsL | SAMN04490201_1287 | SAMN04490201_1153 | Superfamily II DNA and RNA helicase; Belongs to the DEAD box helicase family. | SSU ribosomal protein S12P; Interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone. Located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side and probably holding the rRNA structure together. The combined cluster of proteins S8, S12 and S17 appears to hold together the shoulder and platform of the 30S subunit. | 0.874 |
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