STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDU75907.1Protein of unknown function. (191 aa)    
Predicted Functional Partners:
SDU75896.1
Outer membrane protein OmpA.
 
 
 
 0.989
SDU75901.1
Diguanylate cyclase (GGDEF) domain-containing protein.
 
  
 0.922
SDU50436.1
Outer membrane protein OmpA.
   
 
 0.909
SDU44101.1
Outer membrane protein OmpA.
 
 
 
 0.858
SDU40456.1
Outer membrane protein OmpA.
   
 
 0.835
pal
Peptidoglycan-associated lipoprotein; Part of the Tol-Pal system, which plays a role in outer membrane invagination during cell division and is important for maintaining outer membrane integrity.
   
 
 0.835
SDU44414.1
Outer membrane protein OmpA.
   
   0.759
SDU44532.1
Outer membrane protein OmpA.
   
   0.759
SDU47436.1
OmpA-OmpF porin, OOP family.
   
   0.759
SDU73807.1
Outer membrane protein OmpA.
   
   0.759
Your Current Organism:
Pseudomonas psychrophila
NCBI taxonomy Id: 122355
Other names: CCUG 53877, CIP 107901, DSM 17535, JCM 10889, P. psychrophila, Pseudomonas psychrophila Yumoto et al. 2002, Pseudomonas sp. CF149, Pseudomonas sp. E-3, strain E-3
Server load: low (18%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.