AMA55364.1 protein (Bradyrhizobium sp. CCGELA001)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

AMA55364.1

acyl-CoA dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology. (386 aa)

Predicted Functional Partners:

AMA55365.1

0.939

AMA55363.1

0.867

AMA59680.1

0.787

AMA59981.1

0.787

AMA59990.1

0.787

BCCGELA001_32890

0.787

AMA60699.1

0.787

AMA59977.1

0.757

AMA60532.1

0.755

AMA56864.1

0.752

Your Current Organism:

Bradyrhizobium sp. CCGELA001

NCBI taxonomy Id: 1223566
Other names: B. sp. CCGE-LA001, Bradyrhizobium sp. CCGE-LA001

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structured XML interaction data, according to the 'PSI-MI' data standard

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MFA: multi-fasta format - containing the aminoacid sequences in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AMA55363.1	AMA55364.1	BCCGELA001_03140	BCCGELA001_03145	enoyl-CoA hydratase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the enoyl-CoA hydratase/isomerase family.	acyl-CoA dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.867
AMA55363.1	AMA55365.1	BCCGELA001_03140	BCCGELA001_03150	enoyl-CoA hydratase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the enoyl-CoA hydratase/isomerase family.	acyl-CoA dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.849
AMA55363.1	AMA56864.1	BCCGELA001_03140	BCCGELA001_11830	enoyl-CoA hydratase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the enoyl-CoA hydratase/isomerase family.	pimeloyl-CoA dehydrogenase small subunit; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.444
AMA55363.1	AMA59977.1	BCCGELA001_03140	BCCGELA001_29515	enoyl-CoA hydratase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the enoyl-CoA hydratase/isomerase family.	pimeloyl-CoA dehydrogenase small subunit; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.444
AMA55363.1	AMA60532.1	BCCGELA001_03140	BCCGELA001_32870	enoyl-CoA hydratase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the enoyl-CoA hydratase/isomerase family.	pimeloyl-CoA dehydrogenase small subunit; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.444
AMA55364.1	AMA55363.1	BCCGELA001_03145	BCCGELA001_03140	acyl-CoA dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	enoyl-CoA hydratase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the enoyl-CoA hydratase/isomerase family.	0.867
AMA55364.1	AMA55365.1	BCCGELA001_03145	BCCGELA001_03150	acyl-CoA dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	acyl-CoA dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.939
AMA55364.1	AMA56864.1	BCCGELA001_03145	BCCGELA001_11830	acyl-CoA dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	pimeloyl-CoA dehydrogenase small subunit; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.752
AMA55364.1	AMA59680.1	BCCGELA001_03145	BCCGELA001_27750	acyl-CoA dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Fatty-acid oxidation protein subunit alpha; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.787
AMA55364.1	AMA59977.1	BCCGELA001_03145	BCCGELA001_29515	acyl-CoA dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	pimeloyl-CoA dehydrogenase small subunit; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.757
AMA55364.1	AMA59981.1	BCCGELA001_03145	BCCGELA001_29535	acyl-CoA dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	3-hydroxyacyl-CoA dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the enoyl-CoA hydratase/isomerase family.	0.787
AMA55364.1	AMA59990.1	BCCGELA001_03145	BCCGELA001_29580	acyl-CoA dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	3-hydroxyacyl-CoA dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the enoyl-CoA hydratase/isomerase family.	0.787
AMA55364.1	AMA60532.1	BCCGELA001_03145	BCCGELA001_32870	acyl-CoA dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	pimeloyl-CoA dehydrogenase small subunit; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.755
AMA55364.1	AMA60699.1	BCCGELA001_03145	BCCGELA001_33810	acyl-CoA dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	3-hydroxyacyl-CoA dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.787
AMA55364.1	BCCGELA001_32890	BCCGELA001_03145	BCCGELA001_32890	acyl-CoA dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	dicarboxylate--CoA ligase PimA; Frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the enoyl-CoA hydratase/isomerase family.	0.787
AMA55365.1	AMA55363.1	BCCGELA001_03150	BCCGELA001_03140	acyl-CoA dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	enoyl-CoA hydratase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the enoyl-CoA hydratase/isomerase family.	0.849
AMA55365.1	AMA55364.1	BCCGELA001_03150	BCCGELA001_03145	acyl-CoA dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	acyl-CoA dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.939
AMA55365.1	AMA56864.1	BCCGELA001_03150	BCCGELA001_11830	acyl-CoA dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	pimeloyl-CoA dehydrogenase small subunit; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.434
AMA55365.1	AMA59680.1	BCCGELA001_03150	BCCGELA001_27750	acyl-CoA dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Fatty-acid oxidation protein subunit alpha; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.922
AMA55365.1	AMA59981.1	BCCGELA001_03150	BCCGELA001_29535	acyl-CoA dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	3-hydroxyacyl-CoA dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the enoyl-CoA hydratase/isomerase family.	0.787