STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BAO31035.1Penicillin-binding protein 1C; K05367. (733 aa)    
Predicted Functional Partners:
BAO28398.1
Penicillin-binding protein; K05366.
  
  
0.929
BAO31029.1
Large extracellular alpha-helical protein.
 
   
 0.832
BAO31034.1
Hypothetical protein.
 
     0.799
BAO31033.1
Hypothetical protein.
       0.773
rpsU
30S ribosomal protein S21; K02970; Belongs to the bacterial ribosomal protein bS21 family.
       0.598
mrdA
Peptidoglycan glycosyltransferase; Catalyzes cross-linking of the peptidoglycan cell wall. Belongs to the transpeptidase family. MrdA subfamily.
  
   
 0.534
dnaG
DNA primase; RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication.
 
     0.516
BAO28997.1
Hypothetical protein.
  
     0.505
BAO31032.1
Integrase catalytic subunit.
       0.435
BAO31037.1
Hypothetical protein; K09117.
       0.420
Your Current Organism:
Sulfuritalea hydrogenivorans
NCBI taxonomy Id: 1223802
Other names: S. hydrogenivorans sk43H, Sulfuritalea hydrogenivorans DSM 22779, Sulfuritalea hydrogenivorans sk43H, Sulfuritalea hydrogenivorans str. sk43H, Sulfuritalea hydrogenivorans strain sk43H, sulfur-oxidizing bacterium DSM 22779
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.