STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFU27468.1RNA polymerase sigma-70 factor, ECF subfamily. (183 aa)    
Predicted Functional Partners:
SFU27464.1
Hypothetical protein.
 
    0.808
SFU62356.1
RNA polymerase sigma-70 factor, ECF subfamily.
  
     0.774
SFU27470.1
Hypothetical protein.
       0.773
SFU71203.1
RNA polymerase sigma-70 factor, ECF subfamily.
  
     0.773
SFU55460.1
RNA polymerase sigma-70 factor, ECF subfamily.
  
     0.692
SFU75948.1
KIF-1 binding protein C terminal.
   
   0.650
rpoC
DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
   0.637
rpoB
DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
   0.631
SFU64540.1
Two-component system, chemotaxis family, CheB/CheR fusion protein.
    
   0.619
SFU31355.1
RNA polymerase sigma-70 factor, ECF subfamily.
  
     0.614
Your Current Organism:
Pustulibacterium marinum
NCBI taxonomy Id: 1224947
Other names: CCTCC AB2012862, CGMCC 1.12333, Flavobacteriaceae bacterium E403, KCTC 32192, P. marinum, Pustulibacterium marinum Wang et al. 2013, strain E403
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.