STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFU28257.1TonB-dependent receptor. (955 aa)    
Predicted Functional Partners:
SFU28264.1
3-phytase.
 
   
 0.964
SFU28253.1
Regulatory protein, luxR family.
 
     0.794
SFU46655.1
LruC domain-containing protein.
  
 
   0.598
SFU27378.1
Putative F0F1-ATPase subunit Ca2+/Mg2+ transporter.
  
     0.542
SFU50181.1
Aspartate kinase.
  
     0.501
SFU69889.1
Glycosyl hydrolase family 115.
  
 
   0.478
SFU78112.1
Starch-binding associating with outer membrane.
  
 
   0.473
SFU50245.1
NUMOD4 motif-containing protein.
  
     0.471
SFU38921.1
Glycosyl hydrolase family 115.
  
 
   0.468
SFU75551.1
SusD family protein.
  
 
   0.465
Your Current Organism:
Pustulibacterium marinum
NCBI taxonomy Id: 1224947
Other names: CCTCC AB2012862, CGMCC 1.12333, Flavobacteriaceae bacterium E403, KCTC 32192, P. marinum, Pustulibacterium marinum Wang et al. 2013, strain E403
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.