STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFU32336.1Predicted PurR-regulated permease PerM. (369 aa)    
Predicted Functional Partners:
SFU32347.1
Rho termination factor, N-terminal domain.
       0.799
SFU32357.1
Inorganic pyrophosphatase.
       0.773
SFU51062.1
Hypothetical protein.
  
     0.597
SFU45920.1
Family of unknown function.
  
     0.544
SFU32390.1
Molybdate transport system ATP-binding protein.
       0.527
SFU32404.1
Hypothetical protein.
       0.507
SFU32369.1
Glyoxylase I family protein.
       0.506
SFU32378.1
Mannose-6-phosphate isomerase, cupin superfamily.
       0.506
SFU45932.1
Outer membrane protein assembly factor BamA.
  
     0.502
SFU51076.1
GH3 auxin-responsive promoter.
  
     0.481
Your Current Organism:
Pustulibacterium marinum
NCBI taxonomy Id: 1224947
Other names: CCTCC AB2012862, CGMCC 1.12333, Flavobacteriaceae bacterium E403, KCTC 32192, P. marinum, Pustulibacterium marinum Wang et al. 2013, strain E403
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