STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFU37627.1Iron complex outermembrane recepter protein. (662 aa)    
Predicted Functional Partners:
SFU37618.1
Hypothetical protein.
 
     0.912
SFU37636.1
Hypothetical protein.
       0.799
SFU37608.1
Cytochrome c peroxidase.
 
     0.640
SFU37647.1
Hypothetical protein.
 
     0.615
SFU28595.1
Hypothetical protein.
   
   0.508
SFU31048.1
Hypothetical protein.
   
   0.508
SFU57541.1
Protein TonB.
   
   0.508
SFU57554.1
Protein TonB; Interacts with outer membrane receptor proteins that carry out high-affinity binding and energy dependent uptake into the periplasmic space of specific substrates. It could act to transduce energy from the cytoplasmic membrane to specific energy-requiring processes in the outer membrane, resulting in the release into the periplasm of ligands bound by these outer membrane proteins. Belongs to the TonB family.
   
   0.508
SFU28453.1
TonB family C-terminal domain-containing protein.
   
   0.470
SFU58128.1
Hypothetical protein.
    
   0.470
Your Current Organism:
Pustulibacterium marinum
NCBI taxonomy Id: 1224947
Other names: CCTCC AB2012862, CGMCC 1.12333, Flavobacteriaceae bacterium E403, KCTC 32192, P. marinum, Pustulibacterium marinum Wang et al. 2013, strain E403
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