STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFU50807.1WD40-like Beta Propeller Repeat. (568 aa)    
Predicted Functional Partners:
SFU78602.1
Outer membrane protein OmpA.
 
  
0.695
SFU66239.1
OmpA family protein.
  
     0.660
SFU42493.1
Type IX secretion system membrane protein, PorP/SprF family.
  
     0.654
SFU76202.1
Type IX secretion system membrane protein, PorP/SprF family.
  
     0.651
SFU57578.1
Cell surface protein SprA.
  
     0.641
SFU32989.1
Nicotinamide-nucleotide amidase; Belongs to the CinA family.
    
  0.624
SFU33381.1
Cytochrome c oxidase cbb3-type subunit I/II; Belongs to the heme-copper respiratory oxidase family.
   
  0.624
SFU74057.1
OmpA family protein.
 
  
0.624
SFU48597.1
Type IX secretion system membrane protein, PorP/SprF family.
  
     0.604
SFU78523.1
Type IX secretion system membrane protein, PorP/SprF family.
  
     0.604
Your Current Organism:
Pustulibacterium marinum
NCBI taxonomy Id: 1224947
Other names: CCTCC AB2012862, CGMCC 1.12333, Flavobacteriaceae bacterium E403, KCTC 32192, P. marinum, Pustulibacterium marinum Wang et al. 2013, strain E403
Server load: low (26%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.