STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFU55413.1Uncharacterized membrane protein YckC, RDD family. (241 aa)    
Predicted Functional Partners:
SFU55402.1
Uncharacterized membrane protein SpoIIM, required for sporulation.
 
    0.933
SFU55373.1
Protein of unknown function.
 
     0.916
SFU55387.1
Protein of unknown function.
 
     0.916
SFU55351.1
Uncharacterized conserved protein, DUF58 family, contains vWF domain.
 
    0.908
SFU55393.1
Hypothetical protein.
 
     0.839
SFU55366.1
MoxR-like ATPase.
 
    0.702
SFU38798.1
Ribosome-associated heat shock protein Hsp15.
   
    0.542
SFU60750.1
Penicillin-binding protein 1C.
  
     0.504
SFU60720.1
Hypothetical protein.
  
    0.493
Your Current Organism:
Pustulibacterium marinum
NCBI taxonomy Id: 1224947
Other names: CCTCC AB2012862, CGMCC 1.12333, Flavobacteriaceae bacterium E403, KCTC 32192, P. marinum, Pustulibacterium marinum Wang et al. 2013, strain E403
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.