STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFC94711.1TIGR03086 family protein. (180 aa)    
Predicted Functional Partners:
SFC94683.1
Transcriptional regulator, AraC family.
 
     0.823
SFC55679.1
TIGR03086 family protein.
  
     0.527
SFC43770.1
Uncharacterized conserved protein YndB, AHSA1/START domain.
 
     0.418
Your Current Organism:
Klenkia taihuensis
NCBI taxonomy Id: 1225127
Other names: CGMCC 1.12303, DSM 45962, Geodermatophilus taihuensis, Geodermatophilus taihuensis Qu et al. 2013, K. taihuensis, Klenkia taihuensis (Qu et al. 2013) Montero-Calasanz et al. 2018, NBRC 109416, bacterium 3-wff-81, strain 3-wff-81
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.