STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFD04613.1Hypothetical protein. (546 aa)    
Predicted Functional Partners:
rpoC
DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
   0.570
rpoB
DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
   0.549
SFC57354.1
Mycothiol system anti-sigma-R factor.
  
   0.527
SFD23343.1
Putative zinc-finger.
  
   0.527
SFC25686.1
Chemotaxis protein methyltransferase CheR.
    
   0.525
SFD04641.1
Transcriptional regulator, TetR family.
       0.513
SFD04663.1
Hypothetical protein.
       0.513
SFD04589.1
Haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED.
       0.503
rpoA
DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
   0.501
rpoZ
DNA-directed RNA polymerase subunit omega; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits.
    
   0.501
Your Current Organism:
Klenkia taihuensis
NCBI taxonomy Id: 1225127
Other names: CGMCC 1.12303, DSM 45962, Geodermatophilus taihuensis, Geodermatophilus taihuensis Qu et al. 2013, K. taihuensis, Klenkia taihuensis (Qu et al. 2013) Montero-Calasanz et al. 2018, NBRC 109416, bacterium 3-wff-81, strain 3-wff-81
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.