STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GCA_001238295_02475Unannotated protein. (233 aa)    
Predicted Functional Partners:
GCA_001238295_01785
Unannotated protein.
  
 
 0.845
GCA_001238295_01594
Unannotated protein.
  
 
 0.754
GCA_001238295_01528
Unannotated protein.
  
  
  0.745
GCA_001238295_02288
Unannotated protein.
  
 
 0.734
GCA_001238295_02175
Unannotated protein.
   
    0.719
GCA_001238295_03449
Unannotated protein.
   
    0.719
GCA_001238295_00809
Unannotated protein.
  
 
 0.663
GCA_001238295_02476
Unannotated protein.
       0.651
GCA_001238295_01948
Unannotated protein.
    
 0.642
GCA_001238295_01949
Unannotated protein.
  
 
 0.611
Your Current Organism:
Ruegeria sp. 6PALISEP08
NCBI taxonomy Id: 1225660
Other names: R. sp. 6PALISEP08
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.