Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
NMB0004EpiH/GdmH-related protein; Identified by similarity to EGAD:132655; match to protein family HMM PF02698. (214 aa)    
Predicted Functional Partners:
arsC
Arsenate reductase; Reduction of arsenate [As(V)] to arsenite [As(III)]. Belongs to the ArsC family.
       0.786
NMB0006
Thioredoxin-related protein; Identified by similarity to EGAD:143277.
       0.536
NMB1620
Conserved hypothetical protein; Identified by similarity to GP:3661475; match to protein family HMM PF02016; match to protein family HMM TIGR01409.
 
    0.482
gltX
glutamyl-tRNA synthetase; Catalyzes the attachment of glutamate to tRNA(Glu) in a two- step reaction: glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu); Belongs to the class-I aminoacyl-tRNA synthetase family. Glutamate--tRNA ligase type 1 subfamily.
  
    0.451
NMB0008
Putative cell division protein FtsX; Part of the ABC transporter FtsEX involved in cellular division; Belongs to the ABC-4 integral membrane protein family. FtsX subfamily.
 
     0.449
NMB0001
Putative acetyltransferase; Identified by similarity to EGAD:160712; match to protein family HMM PF00583.
  
    0.431
NMB0002
Hypothetical protein; Identified by Glimmer2; putative.
       0.421
Your Current Organism:
Neisseria meningitidis
NCBI taxonomy Id: 122586
Other names: N. meningitidis MC58, Neisseria meningitidis MC58, Neisseria meningitidis serogroup B strain MC58
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